It didn't make sense for us to put the lights mode in the normal
3-button view/edit ring, so we removed it. To get the lights option
either right-click on the mouse mode matrix or click Mouse > 3 Button
On Mon, Feb 20, 2012 at 6:04 AM, Gianluigi Caltabiano
> I just installed 18.104.22.168 (Mac OS X.7.3) and the "Lights" option among
> "Viewing" and "Editing", in the bottom right panel disappeared...
> Gianluigi Caltabiano
> Da: Jason Vertrees <jason.vertrees@...>
> A: Pete Meyer <pameyer@...>
> Cc: "pymol-users@..." <pymol-users@...>
> Inviato: Venerdì 17 Febbraio 2012 19:19
> Oggetto: Re: [PyMOL] v22.214.171.124: maps and sessions bug
> PyMOL v126.96.36.199, with the session loading bugfix, has been posted
> (http://pymol.org/dsc/ip/). The open-source code has also been
> Please continue to report bugs to us and the open-source bug tracker
> -- Jason
> On Fri, Feb 17, 2012 at 11:51 AM, Jason Vertrees
> <jason.vertrees@...> wrote:
>> Hi Pete,
>> Short Solution:
>> Please save complete symmetry information for your maps before saving
>> with PyMOL v188.8.131.52.
>> Copying the symmetry information from a PDB to the map fixes this
>> problem because it updates the map's space group field. So, typing
>> symmetry_copy src_pdb_file, target_map
>> before saving the file allows me to re-open that session file in PyMOL
>> v1.5.0 and later.
>> Note, you can copy symmetry information from one object to another
>> using, "symmetry_copy src_object, target_object". You can also set the
>> symmetry information by hand, using, the "set_symmetry" command.
>> In some cases I realize this won't help, so we'll put out a new build
>> Detailed Answer:
>> The problem occurs when PyMOL tries to load a session with a map that
>> doesn't have complete symmetry information. In the past PyMOL
>> considered symmetry information for PDBs to be the crystal information
>> plus the space group, whereas it considered symmetry information for
>> maps to be only crystal information. This is why you couldn't
>> replicate a map outside the unit cell. In PyMOL v1.5 we "fixed" that,
>> making PDBs and maps share the same underlying idea of what symmetry
>> information is. This allows you to use symmetry_copy to shuttle the
>> complete information to/from PDBs _and_ maps.
>> If you have any legacy data that can be shared, please let us know and
>> we'll keep it around for testing future builds.
>> -- Jason
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrödinger, LLC
> (e) Jason.Vertrees@...
> (o) +1 (603) 374-7120
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Jason Vertrees, PhD
PyMOL Product Manager
(o) +1 (603) 374-7120