You could also submit the sequence to I-TASSER see what that algorithm can do to with the missing loop. You might want to specify the template and put some constraints in place:
Darrell Hurt, Ph.D.
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Bioinformatics and Computational Biosciences Branch (BCBB)
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From: Joel Tyndall <joel.tyndall@...>>
Date: Thursday, May 9, 2013 1:31 PM
To: yp sun <sunyeping@...>>, "pymol-users@...>" <pymol-users@...>>
Subject: Re: [PyMOL] repair the missing loop in crystal structure
From: yp sun [mailto:sunyeping@...]
Sent: Tuesday, 7 May 2013 1:58 a.m.
Subject: [PyMOL] repair the missing loop in crystal structure
Dear pymol users,
Are there anyone know how to modeling the missing fragment in a crystal structure? This missing fragment may be a flexible loop and so its disordered the electron density is invisible.Thanks.
CAS Key Laboratory of Pathogenic Microbiology & Immunology
INSTITUTE OF MICROBIOLOGY CHINESE ACADEMY OF SCIENCES
NO.1 Beichen West Road,Chaoyang District,Beijing 100101,china