Progressive assembly tool using DNA, protein or profile HMMs as seeds.
Genobuntu Package for Next Generation Sequencing
An Illumina clone assembly system using SOAPdenovo and ABySS
Large-size genome de-novo assembler
A de novo transcriptome assembler.
mitoMaker - a mitochondria assembly and annotation script
mitoMaker - a mitochondria pipeline wrapper script
One of the fastest parallel short read assemblers for large genomes.