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APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://www.poissonboltzmann.org/>. Please register at http://goo.gl/LGVU5j before downloading!347 weekly downloads
The Free Finite Element Package is a library which contains numerical methods required when working with finite elements. The goal of FFEP is to provide basic functions for approximating the solution of elliptic and parabolic PDEs in 2D.6 weekly downloads
Acoustic FDTD Solver (AC2D) -- is a software to simulate acoustic wave propagation in two dimensions based on the finite-difference time-domain (FDTD) method.2 weekly downloads