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APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://www.poissonboltzmann.org/>.178 weekly downloads
An interactive, command line implementation of Dr. Stuart Madnick's Little Man Computer with the ability to load and save written programs. Comes with two small 'compilers' for the computer; one a Lisp-like language, the other BASIC-like.9 weekly downloads