Scientific/Engineering
- Mathematics
- Artificial Intelligence
- Astronomy
- Visualization
- Electronic Design Automation (EDA)
- Bio-Informatics
- Medical Science Apps.
- Human Machine Interfaces
- Chemistry
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ALE_solver CFD code using Arbitrary Lagrangian Eulerian algorithm.
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AMROC Framework for blockstructured adaptive finite volume methods. Provides MPI-parallelized variant of the Berger-Oliger AMR algorithm for Beowulf-clusters. Uses Clawpack. Visualization and conversion tools for HDF4 files included.
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ANACONDAS Implementation of HYCOM physical ocean model with coupled biogeochemical component to study nitrogen fixation in the Amazon plume. This project is still in development, the code may not be functional at this time.
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APBS APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://www.poissonboltzmann.org/>.
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APMO Any Particle Molecular Orbital (APMO) has been created in order to study nuclear quantum effects. The current version of the APMO code is an implementation of the nuclear orbital and molecular orbital approaches (NMO) at the Hartree-Fock level of the
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ASITin4 "Another Simple Interpolation Tool in FORtran" allows to interpolate data from a gridded domain to another. Source and target grids can be regular or irregular. First created for ocean/atmosphere data but it can interpolate any gridded data set.
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AUTO-07P AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.
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AquaTerm (Mac OS X graphics terminal) AquaTerm is a Mac OS X grahics renderer. It allows command line applications written in ObjC, C, FORTRAN, Lisp, Perl or Python to display vector graphics, text and images using a simple API. Adapters for gnuplot, PGPLOT, and PLplot exists as well.
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Ascalaph Designer Graphic molecular dynamic package.
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Ascalaph Graphics Molecular Graphics and Dynamics. Molecular model builder. Part of the Ascalaph Designer http://sourceforge.net/projects/asc-designer/ project. Windows & Linux.
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Ascalaph Quantum is a molecular viewer & model builder for quantum chemistry programs. It has an interface with NWChem, CP2K and PC GAMESS/Firefly quantum programs. http://www.biomolecular-modeling.com/Products.html
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Automatic error propagation This is a programable scientific calculator with a scripting languge for automatic random error propagation in arbitrary mathematical expressions. The language allows expressions written as a collection of sub-expressions or user defined functions.
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Avian Freeware Suite Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)
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BLUP Best Linear Unbiased Prediction is a statistical technique for linear mixed models.
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BlueModel BlueM is a software package for river basin management. It allows for the integrated simulation of discharge and pollution loads in rural and urban catchments, including processes in the water body, using physically-based hydrologic approaches.
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ByoDyn ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
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CFD code Serial CFD code for 2D / 3D problems
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CFD2k CFD (computational fluid dynamics) software. Numerical 2d-solver for compressible ideal gases. Sophisticated turbulence and numerical approach which captures laminar-turbulent transition and aero-acoustic features.
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Climate Data Analysis Tools Ultrascale Visualization Climate Data Analysis Tools
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Climate Modeling Benefit Your Learning of Climate Modeling
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CoastalWorkspace Software bundle to provide development of the following softwares for simulating waves, currents, transport and mixing as well as sediment transport in coastal environments and hydraulic systems: LWBouss1D/2D BoussSand1D/2D OCTEAD FunSedi1D/2D
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Code_Aster Internationalization An extension of Code_Aster to add multilingual support to it's varying GUI interfaces included in the default package. Eventually, we also intend to extend Code_Aster by contributing command file templates and extending the analysis abilities.
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ConPath ConPath was primarily developed as an independent tool, coupled to other Quantum Chemical codes, in order to explore the hyper-surfaces of conically intersecting geometries (equivalently the Intersection Space).
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Cray User Group software repository This project provides a web location for CUG members to share code or links to utilities, scripts, or procedures for managing Cray systems.
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DPREPCHEM-4.1 A program to merge chemical data with meteorological input used in BRAMS model.
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