Open Source Scientific/Engineering Software - Page 8

Open Source Hydraulic Network Analysis Software. A plug-in for Quantum GIS (QGIS) that allows you to create EPANET hydraulic analysis models. EPANET is a popular open source software to analyze water supply networks.

FCSalyzer is a free program for analysing flow cytometry data. It is programmed in Java and should therefore work on many different operating systems. FCSalyzer offers an easy What-you-see-is-what-you get interface and provides the standard analysing tools - dot plots, histograms, complex gating strategies and associated statistics. Impressum / Legal Notice Sven Mostböck Wien Austria e-mail: sven_mostboeck@users.sourceforge.net second contact option: use the open discussion on the FCSalyzer sourceforge page: http://sourceforge.net/p/fcsalyzer/discussion/

System Stability Tester is a multi platform open source clone of SuperPI and comes with a GUI and a CLI. It can be used for CPU and RAM burning, stressing and benchmarking.

Gabedit is a Graphical User Interface for FireFly (PC-Gamess), Gamess-US, Gaussian, Molcas, Molpro, MPQC, NWChem, OpenMopac, Orca, PSI4 and Q-Chem computational chemistry packages.

Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.

A library and attached graphical and console based application to solve and design interlocking burr-type puzzles based on cubes, spheres, triangles and other units.

QLandkarte GT is the ultimate outdoor aficionado's tool. It supports GPS maps in GeoTiff format as well as Garmin's img vector map format. Additional it is the PC side front end to QLandkarte M, a moving map application for mobile devices.

IT++ is a C++ library of mathematical, signal processing and communication classes and functions. Its main use is in simulation of communication systems and for performing research in the area of communications.

GeoWebCache is a WMS tile cache that lets you serve cached map data to WMS clients, Goole Earth, Google Maps and MS Virtual Earth. The system is pluggable on both ends and does automatic matching to the best available tile. It is very fast and scalable.

3DimViewer is a lightweight 3D viewer of medical DICOM datasets that is distributed as open source software. The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist?list=PLCvwUmKRw9ZO4YexLKEXmw_2jPo-kXVRn).

CRC RevEng is a portable, arbitrary-precision CRC calculator and algorithm finder. It calculates CRCs using any of the 112 preset algorithms, or a user-specified algorithm to any width. It calculates reversed CRCs to give the bit pattern that produces a desired forward CRC. CRC RevEng also reverse-engineers any CRC algorithm from sufficient correctly formatted message-CRC pairs and optional known parameters. It comprises powerful input interpretation options. Compliant with Ross Williams' Rocksoft(tm) model of parametrised CRC algorithms.

This project has created scientific firmware for the HP-20b and HP-30b business calculators. WP 34S turns either of these calculators into a powerful keystroke programmable scientific device. According to our customers, it's the most powerful and fastest RPN scientific pocket calculator ever built. WP 34S is alive and stable since 2011. We have succeeded in satisfying the most picky users - read about their experiences on http://www.hpmuseum.org/forum/forum-8.html. Since 2014, WP 34S runs in version 3.3. Our customers confirm its documentation is excellent and comprehensive (see feedback); a full-color printed edition is available from https://www.amazon.com/dp/153366238X since 2018-10-15. Alternatively, you can get a personalized pdf-manual for a ≥ 9 US$ donation here. We have also produced the WP 31S which is derived from the WP 34S source code. This is an entry-level scientific calculator. Its printed manual is available from https://www.amazon.com/dp/1499231164 .

The vital sign simulator simulates a patient monitor and is intended for use in medical emergency training simulations. In combination with a (cheap) cpr-manikin, it offers a low-cost alternative to commercial high-tech patient simulation manikins. It is used with a dual monitor system, one monitor with controls for the operator and one providing the vital signs to the trainees. Heart rate, oxygen saturation, etCO2, respiratory rate, blood pressure and various moving ecg-samples can be set and changed at any time by the operator. The trainee-side interface allows automatic/manual defibrillation, cardioversion and pacing.

Barbecue is a Java library that enables the creation of barcodes in a variety of standard formats that can be displayed as Swing/AWT components, included in printed output, generated as EPS and SVG and displayed in a web application.

TORCS, The Open Racing Car Simulator is a highly portable multi platform car racing simulation. It is used as ordinary car racing game, as AI racing game and as research platform. It runs on Linux (x86, AMD64 and PPC), FreeBSD, OpenSolaris and Windows.

OpenCPN: A concise ChartPlotter/Navigator. A cross-platform ship-borne GUI application supporting * GPS/GPDS Postition Input * BSB Raster Chart Display * S57 Vector ENChart Display * AIS Input Decoding * Waypoint Autopilot Navigation

Mecrisp - A family of optimising native code Forth implementations for MSP430, ARM Cortex M, RISC-V RV32IM(C), MIPS M4K and FPGAs.

AUDio MEasurement System - a multi-platfrom system for audio measurement through sound card in the PC. It contains: generator, oscilloscope, audio spectrum analyzer (FFT) and frequency sweep plot. Compiles and works under Linux, Windows and MacOS. Source code is available in "git" and as ZIP snapshot. For more information see README.md

Euler is a powerful all-in-one numerical software and includes Maxima for seamless symbolic computations. Euler supports Latex for math display, Povray for photo-realistic 3D scenes, Python, Matplotlib and C for scripting, and contains a full programming language. Features include libraries for numerical algorithms, optimization, plotting in 2D and 3D, graphics export, a complete help system, tutorials and examples. Euler runs in Windows natively, or in Linux via Wine. It is completely free of royalties. The source is licensed under GPL.

We are now on GitHub: https://github.com/ScadaBR/ScadaBR ScadaBR is a SCADA (Supervisory Control and Data Acquisition) system with applications in Process Control and Automation, being developed and distributed using the open source model.

Often times, the production system network is inaccessible from the local development environment. If issues are encountered in production systems, it is impossible to use IDEs to debug the application remotely. More importantly, debugging in production environment is unacceptable, as it will suspend all the threads, resulting in the suspension of business services. Developers could always try to reproduce the same issue on the test/staging environment. However, this is tricky as some issues cannot be reproduced easily on a different environment, or even disappear once restarted. And if you're thinking of adding some logs to your code to help troubleshoot the issue, you will have to go through the following lifecycle; test, staging, and then to production. Time is money! This approach is inefficient! Besides, the issue may not be reproducible once the JVM is restarted, as described above. Arthas was built to solve these issues.

DeepChem aims to provide a high-quality open-source toolchain that democratizes the use of deep learning in drug discovery, materials science, quantum chemistry, and biology. DeepChem currently supports Python 3.7 through 3.9 and requires these packages on any condition. DeepChem has a number of "soft" requirements. If you face some errors like ImportError: This class requires XXXX, you may need to install some packages. Deepchem provides support for TensorFlow, PyTorch, JAX and each requires an individual pip Installation. The DeepChem project maintains an extensive collection of tutorials. All tutorials are designed to be run on Google collab (or locally if you prefer). Tutorials are arranged in a suggested learning sequence that will take you from beginner to proficient at molecular machine learning and computational biology more broadly.

DeepXDE is a library for scientific machine learning and physics-informed learning. DeepXDE includes the following algorithms. Physics-informed neural network (PINN). Solving different problems. Solving forward/inverse ordinary/partial differential equations (ODEs/PDEs) [SIAM Rev.] Solving forward/inverse integro-differential equations (IDEs) [SIAM Rev.] fPINN: solving forward/inverse fractional PDEs (fPDEs) [SIAM J. Sci. Comput.] NN-arbitrary polynomial chaos (NN-aPC): solving forward/inverse stochastic PDEs (sPDEs) [J. Comput. Phys.] PINN with hard constraints (hPINN): solving inverse design/topology optimization [SIAM J. Sci. Comput.] Residual-based adaptive sampling [SIAM Rev., arXiv] Gradient-enhanced PINN (gPINN) [Comput. Methods Appl. Mech. Eng.] PINN with multi-scale Fourier features [Comput. Methods Appl. Mech. Eng.]

Q-CTRL Open Controls is an open-source Python package that makes it easy to create and deploy established error-robust quantum control protocols from the open literature. The aim of the package is to be the most comprehensive library of published and tested quantum control techniques developed by the community, with easy-to-use export functions allowing users to deploy these controls on.

The coronavirus package gives a tidy format dataset of the 2019 Novel Coronavirus COVID-19 (2019-nCoV) epidemic. Relevant and updated information about the virus, such as summary of new cases by country and total number of cases by region can be retrieved from this package. The raw data is pulled and arranged by the Johns Hopkins University Center for Systems Science and Engineering, which is gathered from various leading sources including the World Health Organization, China CDC, US CDC, European Centre for Disease Prevention and Control, and Australia Government Department of Health.