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  FreeMat

  Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.

  2,201 weekly downloads
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  Automatically Tuned Linear Algebra Soft.

  ATLAS (Automatically Tuned Linear Algebra Software) provides highly optimized Linear Algebra kernels for arbitrary cache-based architectures. ATLAS provides ANSI C and Fortran77 interfaces for the entire BLAS API, and a small portion of the LAPACK AP

  964 weekly downloads
• Enterprise
  eclim (eclipse + vim)

  Eclim is a set of eclipse and vim plugins to integrate the two projects.

  491 weekly downloads
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  Staden Package

  A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.

  239 weekly downloads
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  APBS

  APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://www.poissonboltzmann.org/>.

  163 weekly downloads
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  PLplot

  Scientific graphics plotting library, supporting multiple languages.

  135 weekly downloads
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  gputils

  gputils is a collection of tools for Microchip PIC microcontrollers. Its goal is to be fully compatible with Microchip's tools, MPASM, MPLINK, and MPLIB.

  191 weekly downloads
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  XDrawChem

  XDrawChem is a drawing application designed for drawing and analyzing chemical structures and reactions.

  165 weekly downloads
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  RMG - Reaction Mechanism Generator

  RMG is an automatic chemical reaction mechanism generator that constructs kinetic models composed of elementary chemical reaction steps using a general understanding of how molecules react (currently limited to C, H, O, and S atoms).

  65 weekly downloads
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  PyLab: A place to release Python tools

  This will be a place to release tools that have not yet been added to SciPy (or will not be added for whatever reason). Currently an interface to ImageMagick is here.

  68 weekly downloads
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  CFD General Notation System (CGNS)

  The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of fluid dynamics equations.

  212 weekly downloads
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  Ascalaph Designer

  Graphic molecular dynamic package.

  32 weekly downloads
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  Systems Biology Software Project

  This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.

  19 weekly downloads
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  fropho

  fropho calculates phonon properties in crystal, which is based on Parlinski-Li-Kawazoe method. Information of forces acting on atoms when an atom is displaced is required as input information. fropho is going to be replaced by phonopy.sourceforge.net.

  21 weekly downloads
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  CalculiXforWin

  Open-Source Multiphysics FEA (FEM) Package

  57 weekly downloads
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  Perl-speaks-NONMEM

  Perl-speaks-NONMEM (PsN) is a set of Perl modules that makes it easier to call the NONMEM program from within other programs. PsN is intended as the basis for a development of tools for computer intensive methods.

  26 weekly downloads
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  Wings for NONMEM

  Wings for NONMEM (wfn) is a set of DOS batch files and awk scripts to make the use of NONMEM more convenient. Simpler NONMEM execution: nmgo runname Extended control stream with user defined names for THETA(), etc. Automatic structured output ...

  21 weekly downloads
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  MMTL Electromagnetic Simulator

  MMTL, the Multilayer Multiconductor Transmission Line 2-D and 2.5-D electromagnetic modeling tool suite, generates transmission parameters and SPICE models from descriptions of electronics interconnect dimensions and materials properties.

  35 weekly downloads
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  SWAN

  SWAN is a third-generation wave model, developed at Delft University of Technology, that computes random, short-crested wind-generated waves in coastal regions and inland waters.

  32 weekly downloads
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  Gnu Xtal System

  The Xtal System is a comprehensive suite of small molecule structural solution, refinement and analysis software, supporting both X-ray, neutron and electron diffraction data. It runs on both Unix and MS Win32 platforms and uses tcl/tk graphics.

  29 weekly downloads
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  Advanced Numerical Instruments 2D

  Advanced numerical instruments: adaptive meshing, FE methods, solvers

  21 weekly downloads
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  ISAAC

  ISAAC (Integrated Solution Algorithm for Arbitrary Configurations) is a computational fluid dynamics (CFD) code developed to test and apply high order turbulence models for compressible flows around complex geometric configurations.

  21 weekly downloads
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  Climate Modeling

  Benefit Your Learning of Climate Modeling

  11 weekly downloads
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  The R Project

  Statistical computing and graphics software.

  18 weekly downloads
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  Pysces

  PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.

  6 weekly downloads

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