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  Perl-speaks-NONMEM

  Perl-speaks-NONMEM (PsN) is a set of Perl modules that makes it easier to call the NONMEM program from within other programs. PsN is intended as the basis for a development of tools for computer intensive methods.

  71 weekly downloads
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  Ascalaph Graphics

  Molecular Graphics and Dynamics. Molecular model builder. Part of the Ascalaph Designer http://sourceforge.net/projects/asc-designer/ project. Windows & Linux.

  14 weekly downloads
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  Pysces

  PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.

  8 weekly downloads
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  Hybrid Stochastic Sim for Supercomputers

  Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.

  6 weekly downloads
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  Avian Freeware Suite

  Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)

  5 weekly downloads
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  SpectralWorks

  Program for viewing, editing, manipulating, and analyzing spectral data. Advanced functions include fitting spectra as LC of standard basis spectra, singular value decomposition, Fourier transform, global fitting of 3D titration and kinetic data.

  3 weekly downloads
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  consgen: protein CONSensus GENeration

  The program consgen takes multiple protein structures in PDB format and aligns them using a modified Procrustes method that aims to maximize residue similarity. The principal result is a consensus structure showing residue conservation.

  1 weekly downloads
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  ConPath

  ConPath was primarily developed as an independent tool, coupled to other Quantum Chemical codes, in order to explore the hyper-surfaces of conically intersecting geometries (equivalently the Intersection Space).

  0 weekly downloads
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  ProgPorts

  ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.

  0 weekly downloads
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  RASMB software

  Software tools used in the study of Reversible Associations in Structural and Molecular Biology

  0 weekly downloads
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  Users-Grid

  Users-Grid is a true virtualized infrastructure for Grid computing which provides computing power transparently. Its defining feature is automatic or seamless job submission. It enables existing software or applications to run on the grid.

  0 weekly downloads