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  Simple Library

  0 weekly downloads

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  C/C++ Libraries for Bioinformatics

  The bio-cpp project provides a C/C++ library for bioinformatics.

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  OpenMS

  An open source framework for LC-MS based proteomics. OpenMS offers datastructures and algorithms for the processing of mass spectrometry data. The library is written in C++.

  210 weekly downloads
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  hpest

  parallel bio-sequences indexing and searching library.

  0 weekly downloads
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  Butterfly Control

  The program receives signal from a butterfly antena (using an electronic board connected to the butterfly's antena and to a khepera robot). The program then provides different fonctionalities to analyse data and control the robot.

  0 weekly downloads
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  BioImageXD

  BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.

  92 weekly downloads
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  CheMecher

  CheMecher is a fully-featured chemical simulator that supports an arbitrary number of reaction steps and chemical species. Uses the Runge-Kutta algorithm for numeric solutions.

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  BioSW-MX

  Desarrollo de software para computo bioinspirado y bioinformatica

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  HOSMoS

  Add to Pymol VR capabilities

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  MIVF

  MIVF - Medical Imaging and Visualization Factory, is a framework for medical applications. It supplies a platform, in which image processing and 3D visualization algorithms can be employed as reusable components (functional modules or plugins).

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  Grid computing enabled tomography

  EGEETomo aims at creating a grid oriented tool to perform tomographic reconstruction on the field of electron microscopy. It is specially designed to work on the EGEE grid but could be easily adapted to other grid platforms.

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  LoopTK

  LoopTK is a C++ toolkit for representing, modeling and manipulating proteins, protein fragments, and loops. It is developed and maintained by the Artificial Intelligence Laboratory at Stanford University.

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  TrimAl

  TrimAl is a bioinformatic tool that cleans multiple protein or nucleotide sequence alignment. The clean alignment (as a result of the TrimAl cleaning process) is used for phylogenetic reconstruction. TrimAl improves the quality of the reconstructed trees

  0 weekly downloads
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  PNE - Pathway Network Editor

  PNE provides an environment for modeling, simulating, and optimizing biological networks including regulatory and metabolic networks.

  0 weekly downloads
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  Multiplex Manager

  Multiplex Manager is a cross platform tool for designing and optimizing Multiplex PCR (Polymerase Chain Reactions), as used in genetic analysis.

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  Cryo-EM Segmentation and Registration

  Software for segmentation and registration of 3D density maps obtained using cryo-electron microscopy.

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  The Boolean Network Toolkit

  The Boolean Network Toolkit is an efficient and easy-to-use object-oriented C++ library which enables researchers to simulate ad carry out experiments (like attractor sampling and Derrida plot computation) on large boolean networks.

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  Reception greeter

  Watching the entrance area with a webcam and if a face is recognized, a personalized greeting is output to the speakers. Using QT, OpenCV, libface and espeak.

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  OpenEEG - EEG hardware and software

  The OpenEEG project is about creating a low cost EEG device

  79 weekly downloads
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  OsiriX - DICOM Viewer

  DICOM Viewer

  31 weekly downloads
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  HyPhy

  HyPhy is a comprehensive environment for maximum likelihood statistical analysis of genetic sequence data. It includes a large collection of out of the box analyses, a feature-rich graphical user interface for custom data analysis and a scripting languag

  0 weekly downloads
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  William J. Dreyer Tapestry

  A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.

  0 weekly downloads
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  Trellis-Neuro

  Trellis-Neuro is an Open Source, multi-platform application suite for interfacing with neurophysiology data acquisition and stimulation instruments. It is based on the eXtensible Instrument Processing Protocol (XIPP), QT 4, and C/C++.

  0 weekly downloads
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  TinkerCell : CAD for Synthetic Biology

  TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.

  71 weekly downloads
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  Synteniser: the visual synteny analyser

  Synteniser is an application for visual synteny analysis using an adaptation of the Smith-Waterman sequence alignment algorithm to work at the gene rather than the nucleotide level. Synteniser also includes BRH and pattern analysis algorithms.

  0 weekly downloads
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  Evol

  Virtual machine/emulator; "holding pen" for self-replicating programs written in custom RISC assembly-like language, evolving via random point mutations and periodic fitness-based cullings. Inspired (like Avida) by Thomas Ray's alife simulator, Tierra

  0 weekly downloads

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