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  Simple Library

  0 weekly downloads

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  Cansam

  A C++ library for basic operations on SAM/BAM files, which contain next-generation sequencing data in the Sequence Alignment/Map format.

  0 weekly downloads
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  The GeneJock Project

  The goal of the GeneJock Project is to produce an Open Source DNA sequence editor that is cross-platform, full featured and extensible. A second goal (which may become more important), is the development of a C++ library for biological data manipulation.

  0 weekly downloads
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  Evol

  Virtual machine/emulator; "holding pen" for self-replicating programs written in custom RISC assembly-like language, evolving via random point mutations and periodic fitness-based cullings. Inspired (like Avida) by Thomas Ray's alife simulator, Tierra

  0 weekly downloads
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  openModeller

  openModeller is a complete C++ framework for species potential distribution modelling. The project also includes a graphical user interface, a web service interface and an API for Python.

  111 weekly downloads
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  QuteMol

  QuteMol is a real time, high quality molecular visualizer that offers an array of innovative visual effects. QuteMol aims at improving the clarity of rendered images and at offering a better understanding of the molecular 3D shape and spatial structure.

  55 weekly downloads
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  HyPhy

  HyPhy is a comprehensive environment for maximum likelihood statistical analysis of genetic sequence data. It includes a large collection of out of the box analyses, a feature-rich graphical user interface for custom data analysis and a scripting languag

  0 weekly downloads
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  William J. Dreyer Tapestry

  A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.

  0 weekly downloads
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  DNA Ninja - A Smooth DNA Editor

  DNA Ninja will be designed as a DNA editor allowing to modify DNA files, annotate features, make restriction maps and virtual gels, pick primers and find ORFs. The main goal is that the program is intuitive to use and runs fast.

  0 weekly downloads
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  BioSimz

  The BioSimz project aims to deliver a library (as well as the interface) to conduct large-scale biomolecular simulations at their atomic scales of detail. The initiative idea is to observe the protein crowding in vivo; it now can do much more than that!

  0 weekly downloads
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  Trellis-Neuro

  Trellis-Neuro is an Open Source, multi-platform application suite for interfacing with neurophysiology data acquisition and stimulation instruments. It is based on the eXtensible Instrument Processing Protocol (XIPP), QT 4, and C/C++.

  0 weekly downloads
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  TinkerCell : CAD for Synthetic Biology

  TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.

  67 weekly downloads
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  Synteniser: the visual synteny analyser

  Synteniser is an application for visual synteny analysis using an adaptation of the Smith-Waterman sequence alignment algorithm to work at the gene rather than the nucleotide level. Synteniser also includes BRH and pattern analysis algorithms.

  0 weekly downloads
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  mMWeb

  No description

  0 weekly downloads
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  Idiotypic Network Model

  This project aims at creating a program that modelises an idiotypic network. This is a biological phenomenon in the immune system. We want to see how thing will behave by using a graphical library.

  0 weekly downloads
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  Hardvark

  Hardvark will animate a 3D representation of metabolism in a microbial cell.

  0 weekly downloads
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  Network decomposition tool

  A tool for decomposing biochemical networks into subnetworks based on the global geometry of the network.

  0 weekly downloads
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  Swift

  Swift is an open source package for primary data analysis on next-gen sequence data "from images to basecalls". Currently Swift is targeted toward Solexa/Illumina sequencing, but is designed to be platform agnostic.

  0 weekly downloads
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  libangst

  A C++ library for directional statistics.

  0 weekly downloads
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  libPepsi

  A generic C++ library for peptide simulations.

  0 weekly downloads
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  libsmm

  Libsmm is a framework for performing inference and learning within the semi-CRF framework of Sarawagi and Cohen 2005.

  0 weekly downloads
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  Genome Wide Analysis Tools

  This collection of tools written in C++ with the STL library provides the basic building blocks to develop complex analysis pipelines on genomic coordinates.

  0 weekly downloads
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  TangerineProt

  Tangerine is a protein sequence alignment tool based on cross-correlation. Its aim is to provide maximum sensitivity while being computationally efficient.

  0 weekly downloads
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  SaguaroGW

  Saguaro Genome-Wide is a program to detect signatures of selection within populations, strains, or species. It takes SNPs or nucleotides as input, and creates statistical local phylogenies for each region in the genome.

  0 weekly downloads
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  ProteoWizard

  The ProteoWizard Library is a set of software libraries and tools for rapid development of proteomics data analysis software. The libraries are cross-platform and built from the ground up using modern C++ techniques.

  19 weekly downloads
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  Molecular Modeling Templates

  The Molecular Modeling Templates, MMT is a C++ class library for molecular simulation applications. MMT serves as a code basis that can be easily extended and modified to perform Monte Carlo and molecular dynamics simulations.

  0 weekly downloads

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