Bio-Informatics
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The Nodes for KNIME project The Nodes4KNIME project is an open source initiative to develop independant nodes for use with the KNIME datamining and workflow project. See http://www.knime.org/
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ASAP Sequence Annotation Pipeline Automated Sequence Annotation Pipeline (ASAP) is designed to ease routine investigation of new functional annotations on unknown sequences, such as expressed sequence tags (ESTs), through querying of web-accessible databases.
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OpenChrom Manual Peak Identification Manual Identification of Peaks
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(AB)² Simulation Simulation for Physics / Bilogics Systems
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(NCS) NEQUIM Contact System Tool for analyze of interactions in ligand-protein complexes
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16S Detection Thresholds Perl scripts used to process mock 16S data for threshholds.
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3' UTR Mutation Miner Our work will focus on 3’-UTR region, using rule-based system and some datasets to extract 3’-UTR mutation information swiftly and accurately from the texts.
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3D Genome Tuner 3D Genome Tuner draws circular genome map and enables viewing multi-genomes in 3D context. It also provides genome analysis and sequence alignment, making it a powerful tool in genome studies and demonstrations.
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3D Viewer for Phylogenetic Trees A 3D viewer for phylogenetic trees. Speciation events are displayed in the plane according to the species tree, while duplication events are displayed in the other dimension.
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3DCAlib CAlib3D is a platform independent library for 3D cellular automata (CA) simulations. It is written in C++. Its advantage is in his speed and memory management.
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3v: Voss Volume Voxelator Several RNA and protein structure volume calculation tools.
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4D Map of the Virtual Sea Urchin Embryo A research project aimed at creating a graphical interface that provides a spatial and temporal context in which to browse the genomic regulatory network of the sea urchin during the early stages of its embryonic development.
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4DiCeS 4-Dimensional Cell Simulator (4DiCeS) is a framework on hybrid (stochastic and deterministic) modeling and simulation of (whole) cell environments in 4D. The framework may incorporate any reaction and diffusion algorithms applicable in a 4D grid layout.
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5DT DataGlove Driver A driver for the 5DT datagloves written in pure C++ using only the STL. Meant to be cross-platform, but written on and developed for IRIX sytems.
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@Note @Note is a Biomedical Text Mining workbench that integrates current Biomedical Text Mining (BioTM) methods and provides biologists with intuitive tools capable of supporting their bibliographic searches and further literature curation.
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@Note2 @Note2 - A workbench for Biomedical Text Mining
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A Simple Sample Database ASSD is a simple biological sample database focused on the storage of proteomics data. It tracks every processing step incl. results throughout a sample's lifetime. Next to proteomics data it can also store other results like FACS or Western Blots.
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A comparison of texture analysis methods In this we realize a comparison of any novel and state of art methods for color texture analysis.
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A database for musem specimens A Content Management System for collection data of taxonomic specimens. Organize your museum specimens, collection vouchers in one user-friendly database.
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AAARF Genomic Repeat Investigation AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.
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ABAC Algorithmic Based Automatic Contiguation of Shot-gun sequences (ABACAS) is an integrated platform for quickly contiguating reference based assemblies.
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ABACAS Algorithm Based Automatic Contiguation of Assembled sequences (ABACAS) is an integrated platform for quickly contiguating reference based assemblies.
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ABAF A Bioinformatics Analysis Framework
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ABC-SysBio ABC-SysBio implements likelihood free parameter inference and model selection in dynamical systems. It is designed to work with both stochastic and deterministic models written in Systems Biology Markup Language (SBML).
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ABCGrid abcgrid stands for Application for Bioinformatics Computing Grid which is a client/server package for small and mid-scale biology labs.
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