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  AMOS

  AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.

  89 weekly downloads
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  Live HTTP Headers Replay

  A Perl script that, given the output of the Firefox extension Live HTTP Headers, will replay the script using Test::WWW::Mechanize.

  4 weekly downloads
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  QPDF

  QPDF is a C++ library and set of programs that inspect and manipulate the structure of PDF files. It can encrypt and linearize files, expose the internals of a PDF file, and do many other operations useful to end users and PDF developers.

  422 weekly downloads
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  Vipul's Razor

  Vipul's Razor is a distributed, collaborative, spam detection and filteringnetwork. The primary focus of the system is to identify anddisable an email spam before its injection and processingis complete.

  90 weekly downloads
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  MUMmer

  MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.

  111 weekly downloads
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  Snd

  Snd is a sound editor

  1 weekly downloads
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  SpamAssassin for Win32

  SpamAssassin for Win32 is a free and powerful anti-spam filter for Windows. Includes a resident daemon for mail servers and a user-friendly personal spam filter that works with any POP3 account and any email client.

  214 weekly downloads
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  Pre-defined Compiler Macros

  Overview of pre-defined compiler macros for standards, compilers, operating systems, and hardware architectures.

  6 weekly downloads
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  CryptoPy

  CryptoPy is a pure python implmentation of cryptographic algorithms and applications. The algorithms are developed for readability more than speed. The collection now includes IEEE 802.11i specific algorithms that generated the test vectors for 802.11i.

  20 weekly downloads
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  Linux File-system defragmenter

  The defragfs project aims on file-system/directory defragmentation of the Linux operating system, it is (currently) file-system independent and only CLI, hope further development could bring the GUI and better functionality.

  38 weekly downloads
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  RmiR

  RmiR is an R package for the analysis of microRNA and gene expression microarrays. The package is designed to coupling microRNA and gene expression data, using different databases, like TargetScan, mirBase, picTar,TarBase and others...

  2 weekly downloads
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  scripts4cf

  This is a collector site of tools and scripts for the digital forensics. http://scripts4cf.sf.net

  8 weekly downloads
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  slclust

  slclust: a utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters. The slclust utility is written in ANSI C++.

  2 weekly downloads
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  PerlMol

  PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry with the philosophy that "simple things should be simple". It should be possible to write one-liners that use this toolkit to do meaningful "molecular munging".

  1 weekly downloads
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  WikyBlog : Wiki / Blog CMS

  WikyBlog is a CMS/Groupware application written in PHP/MySQL that fuses collaborative editing features of wikis with user friendly publishing characteristics of blogs. MediaWiki derived wiki syntax, AJAX enhanced, UTF8 and extendable (google maps).

  18 weekly downloads
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  xuse requirements & use case management

  Xuse manages requirements, use cases & other artefacts that drive software design. Xuse focuses on clear documentation & communication. It defines an XML data model for requirements & use cases with XSLT providing multiple derived views: HTML/SVG/PDF

  21 weekly downloads
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  GLEAN

  GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.

  5 weekly downloads
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  Encode Arabic

  Implementations for encodings of Arabic, in Haskell and Perl. Support for ArabTeX, Buckwalter, UTF and other encodings. Interpretable notations generating original orthography and/or phonetic transcriptions.

  3 weekly downloads
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  Another Portal for Examining DNA

  The system is designed for the automated analysis of high throughput sequencing data. At present Aped is focused on the analysis of data derived from Sanger and 454 sequencing. Additional functionality exists for SAGE and taxonomic profiling.

  1 weekly downloads
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  SAY - Text To Speech for WIN32

  Type it in - hear it out! The SAY project is about listening to what you key-in. Now updated to include a voice clock. Known as "Say Time", both the SAY.EXE console app and the SayTime.EXE GUI installer are here. Two more STDNOJ projects by R.A. Nagy

  8 weekly downloads
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  Webtunnel

  Webtunnel is an HTTP tunnel with some unique features: it runs in the context of a web server; it uses simple requests/responses for proxy traversal; and it is multi-threaded to allow many parallel connections to many destinations simultaneously.

  14 weekly downloads
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  NIP installer project

  NIP is a tool to install linux, coping the boot necessary files to harddisc and taking the files from cd or network. It's used to automatize linux instalations for tests and massive linux install in clusters/datacenters.

  0 weekly downloads
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  Getopt::Euclid

  Getopt::Euclid is a Perl module that uses your program's own documentation to create a command-line argument parser. This ensures that your program's documented interface and its actual interface always agree. Only development code is hosted on this Sourceforge webpage. Download releases of Getopt::Euclid from CPAN: http://search.cpan.org/dist/Getopt-Euclid/

  2 weekly downloads
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  EiC

  This is a resurrected open source C Interpreter project. The new release includes enhancements that allows the C Interpreter to talk to logic simulation so that it can be used to drive simulation. This project bridges Software and logic simulation.

  12 weekly downloads
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  MP3 Sorter

  Command line utility for sorting MP3 files based on Tag information. Written in Perl and available as a stand-alone executable for Windows.

  1 weekly downloads

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