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BODE: Bioinformatics ODds and Ends A collection of bioinformatics-related software created by members of Cancer Research UK (possibly among others).
1 weekly downloads -
BayesRate Bayesian estimation of diversification rates
1 weekly downloads -
CONTRA Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
45 weekly downloads -
ConDEnSE ConDEnSE (Confidential Data Enabled Statistical Exploration) will be a web-based environment for statistical analysis of confidential data from various database sources, based on Plone and R, and using the Jackknife method of confidentiality protection.
1 weekly downloads -
Cygwin Ports Repository of desktops and programs for the Cygwin platform
5,444 weekly downloads -
Django-dataplot Django-dataplot enables developers using the Django web framework to seamlessly integrate data-driven graphical plots into their web pages.
1 weekly downloads -
Dvorkin's Python Utilities A Python library bringing together utilities I've written over the years for work in bioinformatics and biostatistics, which should be generally applicable outside these fields as well. Focuses on string processing, DBI, and math.
1 weekly downloads -
Electrophysiology & circular stats tools Data analysis and circular statistics with OpenElectrophy and R
1 weekly downloads -
GAIuS Build intelligence into your application by integrating it with the GAIuS framework. GAIuS is the world's first and only framework that allows application developers to build intelligence into their products without writing a single line of AI code.
0 weekly downloads -
GEPETTO - Gene Prioritization in Java GEPETTO (GEne Prioritization ExTended TOol)
2 weekly downloads -
HOEA Hoea is a python module for hierarchical ontology enrichment analysis, which facilitated GO (Gene Ontology)/KO (KEGG Orthology) enrichment analysis at any desktop.
1 weekly downloads -
Hierarchical Stochastic Block Model just a bunch of PhD projects
0 weekly downloads -
Ida Ida is a data analysis application framework that features user interface integration, database support, and bridges to popular statistical analysis packages. Application development is currently focused on the bio-informatic analysis of microarrays.
0 weekly downloads -
InPUT IoC container for the configuration and design for experimental design
0 weekly downloads -
Insilicos Cloud Army Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.
2 weekly downloads -
Likindoy Program for industrial hardware analisys: get data from external source (modbus, ftp, sftp, socket), load it into database (sql or other), plot graphs from it and send it to external server by email, ssh, ftp or socket. Support new modules from developer
0 weekly downloads -
Lithic Experiment and Anlysis Software LEX-AS is a relational database frontend providing management and analysis functions for stone tool research. Developed in Python, using R-Project for analysis and visualization.
0 weekly downloads -
MetaBoFlux Metaboflux is a generic approach for predicting flux distribution in metabolic networks under multiple and various constraints deducted from the experiments, to increase the biological relevance of the model.
1 weekly downloads -
MoCObench Benchmark instances for multiobjective combinatorial optimization
0 weekly downloads -
MyNook A machine learning system for supervised document classification
0 weekly downloads -
Open Metaheuristic Open Metaheuristic (oMetah) is a library aimed at the conception and the rigourous testing of metaheuristics (i.e. genetic algorithms, simulated annealing, ...). The code design is separated in components : algorithms, problems and a test report generator
1 weekly downloads -
Pattern based fact extraction Tool for extracting structured information from Estonian language
0 weekly downloads -
RDXplorer The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.
2 weekly downloads -
SIAM No description
0 weekly downloads -
Statistika Statistika will be a GUI for the R statistics programming language that mimics the layout of SPSS. The primary goal is to implement SPSS's analysis menu such that results from statistika and SPSS coincide.
0 weekly downloads