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  ANACONDAS

  Implementation of HYCOM physical ocean model with coupled biogeochemical component to study nitrogen fixation in the Amazon plume. This project is still in development, the code may not be functional at this time.

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  APBS

  APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://www.poissonboltzmann.org/>.

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  BMDExpress

  BMDExpress is a bioinformatics tool used to analyze microarray dose-response data. The analysis provides benchmark dose estimates at which different cellular processes are altered in toxicogenomic experiments.

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  BlockIt

  BlockIt provides a Python framework to scan and parse a program file into constituent nested blocks, however defined, forming a block tree of your code and can be used as a mechanism to "extend" in some sense, the underlying programming language.

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  CSPH

  This project aims to develop the compression SPH code can deal with the multi-phase surface motion problem. The code can simulate the wave surface tracking, wave breaking and wave interaction with structure.

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  Digest2 Statistical Ranging

  Note: This project is no longer maintained. A newer version of the program is at https://code.google.com/p/digest2/. Statistical ranging for short arc moving object astrometry. Accepts atstrometry in MPC 80 charcater observation format, rates objects on likelyhood that they are yet-unknown near Earth objects.

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  Epler

  The epler project's main intention is to provide a library with bindings to C++, and eventually C, Python and Fortran for manipulating, analyzing and visualizing large datasets. Building frontends on top of this isolated library is also planned.

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  Fire Dynamics Simulator and Smokeview

  FDS and Smokeview Development has moved to http://fire.nist.gov/fds please update your bookmarks.

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  FortWrap

  FortWrap is a python script that parses Fortran 90/95/200X source files and generates wrapper code in the form of C++ classes. FortWrap is intended to be used with object oriented Fortran code that makes use of Fortran derived types.

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  GS2: Gyrokinetic Microturbulence Project

  GS2: Gyrokinetic Turbulence Simulator. Low frequency, electromagnetic turbulence occurs in magnetic fusion experiments, astrophysical plasmas, and basic physics experiments. GS2 is a full-featured, portable, parallel code for gyrokinetic simulation.

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  GeographicLib

  Geographic library

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  MetabolODE

  MetabolODE derives, solves, and optimizes a set of differential equations describing the metabolic flux through any biochemical pathway.

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  MinGW - Minimalist GNU for Windows

  A native Windows port of the GNU Compiler Collection (GCC)

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  Moving Finite Elements

  The Moving Finite Elements project hosts a collection of simulation codes for time-dependent PDE systems that implement various forms of Keith Miller's gradient-weighted moving finite element (GWMFE) method.

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  NBODY-6

  Direct integration n-body code

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  NKA

  Nonlinear Krylov acceleration of fixed-point and quasi-Newton methods

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  OpenMultiphysics

  Application Integration for HPC Multiphysics

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  PCP (Pattern Classification Program)

  PCP (Pattern Classification Program) is an open-source machine learning program for supervised classification of patterns. PCP is a binary executable running on Linux and Windows (under Cygwin environment).

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  Petaca

  A collection of foundational Fortran modules and libraries

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  RMG - Reaction Mechanism Generator

  RMG is an automatic chemical reaction mechanism generator that constructs kinetic models composed of elementary chemical reaction steps using a general understanding of how molecules react (currently limited to C, H, O, and S atoms).

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  ROCA

  A model of the water, C, nutrients and microbial communities of the Amazon River. This project is still in development, the code may not be functional at this time.

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  Smala

  Neural networks toolbox.

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  Virtual Cell

  Open Source home for the Virtual Cell platform (VCell). See http://vcell.org/ for details.

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  YAJL-Fort

  Fortran interface to the YAJL library

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  fdepend

  This tools produces Gnu Make dependencies for Fortran Source files. The Fortran source files can be in fixed (f77) or free (f90) format. It generates dependencies for include file, #include files and modules.

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