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  Staden Package

  A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.

  221 weekly downloads
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  Automatically Tuned Linear Algebra Soft.

  ATLAS (Automatically Tuned Linear Algebra Software) provides highly optimized Linear Algebra kernels for arbitrary cache-based architectures. ATLAS provides ANSI C and Fortran77 interfaces for the entire BLAS API, and a small portion of the LAPACK AP

  842 weekly downloads
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  MinGW-builds

  Dual-target(32 & 64-bit) MinGW compilers for 32 and 64-bit windows

  2,366 weekly downloads
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  APBS

  APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://www.poissonboltzmann.org/>.

  135 weekly downloads
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  MinGW - Minimalist GNU for Windows

  A native Windows port of the GNU Compiler Collection (GCC)

  1,216,019 weekly downloads
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  Systems Biology Software Project

  This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.

  19 weekly downloads
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  Pysces

  PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.

  8 weekly downloads
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  osFree operating system

  open source analogue of IBM OS/2 operating system

  0 weekly downloads
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  The Amsterdam Compiler Kit

  A complete compiler toolchain that will cross-compile ANSI C, K&R C, Pascal, Modula-2, Occam, Fortran and Basic for a number of architecture including, but not limited to, the 6500, 68000, Z80, i80, i86, i386 and PDP-11.

  36 weekly downloads
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  matlisp

  MatLisp is a package for Common Lisp for handling matrices with real-valued or complex-valued elements. BLAS is used for elementary matrix operations and LAPACK is used for linear algebra routines.

  2 weekly downloads
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  TclODE - ODE Solver for Tcl

  Ordinary Differential Equation (ODE) solver for Tcl. Handles both stiff and non-stiff sets of equations; does time-evolved initial value problems and root finding. Based on the popular Lawrence Livermore solver LSODE.

  2 weekly downloads
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  cca-forum

  Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.

  9 weekly downloads
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  AquaTerm (Mac OS X graphics terminal)

  AquaTerm is a Mac OS X grahics renderer. It allows command line applications written in ObjC, C, FORTRAN, Lisp, Perl or Python to display vector graphics, text and images using a simple API. Adapters for gnuplot, PGPLOT, and PLplot exists as well.

  202 weekly downloads
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  gridpack

  GridPACK is a community-developed open-source collection of code for use in power systems research, analysis, and operation.

  0 weekly downloads
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  OpenMultiphysics

  Application Integration for HPC Multiphysics

  1 weekly downloads
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  Ichnaea

  A Performance Timing Library

  1 weekly downloads
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  WHPC

  A build environment for high-performance numeric codes on Windows

  4 weekly downloads
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  AUTO-07P

  AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.

  86 weekly downloads
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  chasm-interop

  Chasm-interop is a set of tools that parses C++ and Fortran 90 source files and automatically generates bridging code to provide for seamless language interoperability.

  1 weekly downloads
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  IFEFFIT: Interactive XAFS Analysis

  IFEFFIT is a library and set of interactive programs for the analysis of x-ray absorption fine-structure (XAFS) data. IFEFFIT combines state-of-the-art analysis algorithms with graphical display of XAFS data, and general data manipulation. It can be

  99 weekly downloads
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  PCP (Pattern Classification Program)

  PCP (Pattern Classification Program) is an open-source machine learning program for supervised classification of patterns. PCP is a binary executable running on Linux and Windows (under Cygwin environment).

  5 weekly downloads
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  nusdas database system

  A numerical grid database designed for meteorological application. This is reimplementation of API shown in http://ams.confex.com/ams/Annual2005/techprogram/paper_87457.htm

  0 weekly downloads
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  OSKI: Optimized Sparse Kernel Interface

  The Optimized Sparse Kernel Interface (OSKI) Library provides automatically tuned sparse matrix kernels, for use by solver libraries and applications. OSKI is part of the BeBOP project on performance tuning and analysis at U.C. Berkeley. (Go Bears!)

  1 weekly downloads
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  ExodusII

  EXODUS II is a model developed to store and retrieve transient data for finite element analyses. It is used for preprocessing, postprocessing, as well as code to code data transfer. ExodusII is based on netcdf. Includes the nemesis parallel extension

  18 weekly downloads
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  Ftcl - combining Fortran and Tcl/Tk

  The Ftcl package allows developers to include Tcl/Tk in their Fortran programs or to create Fortran-based extensions for Tcl/Tk.

  2 weekly downloads

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