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  PerfSuite

  A collection of performance analysis software that can assist with a variety of techniques useful for application software optimization and benchmarking. The current release provides support for analysis with hardware performance counters on Linux.

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  FST to v5d Data Converter

  The fst2v5d package converts data stored in the Canadian RPN Standard File (FST) format into Vis5D format. FST files, commonly used to store meteorological data, are scanned by fst2v5d to generate both 4D fields and independent topography input files.

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  trek7

  Trek7 the original multiplayer network star trek game from the early-mid 70s. We are hoping to revive this classic (no, its not netrek/mtrek, not even close). hopefully the SF community can help port this to modern day networks.

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  AgenTools

  Computational modelling is a interdisciplinary field spanning many techniques and programming languages. AgenTools is a project dedicated to establishing increased modularity in scientific computing packages and a portal linking to other existing project

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  XAudine

  XAudine : Linux control command software,GUI and device drivers for operating Audine astronomy CCD camera.

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  FLUXp

  A Computational Aerodynamics/Fluid Dynamics solver. It solves Euler, (Reynolds-Averaged) Navier-Stokes equations (or LES/DES for the later version) in parallel on unstructured grids.

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  MMTL Electromagnetic Simulator

  MMTL, the Multilayer Multiconductor Transmission Line 2-D and 2.5-D electromagnetic modeling tool suite, generates transmission parameters and SPICE models from descriptions of electronics interconnect dimensions and materials properties.

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  fortranposix

  This is an implementation of some POSIX functions in Fortran 90/95. Not complete, and might not even work on all Unix systems.

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  ProgPorts

  ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.

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  LINARP

  LINARP - Linarp Is Not A Rietveld Program; Software for the analysis of crystallographic data

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  PCP (Pattern Classification Program)

  PCP (Pattern Classification Program) is an open-source machine learning program for supervised classification of patterns. PCP is a binary executable running on Linux and Windows (under Cygwin environment).

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  nusdas database system

  A numerical grid database designed for meteorological application. This is reimplementation of API shown in http://ams.confex.com/ams/Annual2005/techprogram/paper_87457.htm

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  Hybrid Stochastic Sim for Supercomputers

  Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.

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  Dynamic Probe Class Library

  Dynamic Probe Class Library (DPCL) is an object based C++ class library that provides the necessary infrastructure to allow tool developers and sophisticated tool users to build parallel and serial tools through technology called dynamic instrumentation.

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  OpenEnsemble

  OpenEnsemble is advanced object-based middleware software for distributing modelling and simulation across networks and the Internet.

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  Fast Gauss Transform

  Fast Gauss Transform Implementation Evaluate the sum of N Gaussians at M points

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  Weather Research and Forecast Model

  Weather Research and Forecast Model

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  Tahoe

  Tahoe is a research-oriented platform for the development of numerical methods and models for the simulation of complex material behavior.

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  OSKI: Optimized Sparse Kernel Interface

  The Optimized Sparse Kernel Interface (OSKI) Library provides automatically tuned sparse matrix kernels, for use by solver libraries and applications. OSKI is part of the BeBOP project on performance tuning and analysis at U.C. Berkeley. (Go Bears!)

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  LibCPIXE

  LibCPIXE is a library for simulation of Particle Induced X-ray emission spectra.

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  PEBLS Evolutionary Biology Libraries

  PEBLS Evolutionary Biology Libraries (PEBLs) provides a framework to develop programs quickly and effectively in Java, C++, and C.

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  Platform Independent Library for Fortran

  Platform Independet Library for Fortran 90/95 - The portable way for creating GUIs, doing file IO etc. This library is an attempt to build a platform and compiler independent library for Fortran 9x.

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  ExodusII

  EXODUS II is a model developed to store and retrieve transient data for finite element analyses. It is used for preprocessing, postprocessing, as well as code to code data transfer. ExodusII is based on netcdf. Includes the nemesis parallel extension

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  Automatic error propagation

  This is a programable scientific calculator with a scripting languge for automatic random error propagation in arbitrary mathematical expressions. The language allows expressions written as a collection of sub-expressions or user defined functions.

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  Kepner Statistical Tools

  A group of statistical tools used in the development and structuring of clinical trials by the American Cancer Society. Sample size calculators.

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