Welcome to spmtools

The toolboxes collected in spmtools come from a variety of sources. Most of them were developed at Freiburg Brain Imaging. The tools are split in several toolboxes:

• Diffusion: a toolbox that allows to compute diffusion tensors, anisotropy and basic fiber tracking from diffusion weighted images
• TSDiffAna: a toolbox to evaluate the quality of your acquired data and to identify possibly problematic scans
• Render3D: a toolbox that allows to render e.g. SPM results on a 3D surface of the brain
• Demos: this is not really a toolbox, but a collection of demonstration scripts and functions that explain some of the basic principles used in SPM paradigm and model design
• Volumes: a multitude of tools that do not fit into the above categories and somehow manipulate
  • NIfTI images
  • SPM results

Download and Installation

The toolboxes can be downloaded from the Sourceforge download site or from Subversion.

Download from Sourceforge download site

Select the appropriate toolbox archive for the toolbox and SPM version you want to use.

Download from Subversion

The subversion web interface allows to download tar.gz archives which contain all files and folders for the toolboxes. Navigate to the toolbox you want to download. For SPM8, go to the trunk/ folder to download the latest revision. For the Diffusion and Volumes toolbox, there are separate SPM5 versions available in the branches/spm5/ folder. In this folder, you should see a toolbox/ folder. To start your download, click Download GNU tarball.

Installation

Save the downloaded file in your SPM software folder (where all you SPM code is installed). The downloaded file can be unpacked from the MATLAB command line with the command untar('downloaded_file.tar.gz',spm('dir')). Replace `'downloaded_file.tar.gz'¸ with the path and filename of the file you just downloaded. Alternatively, you can use any file manager to unpack the file. If successful, you should find additional entries in your SPM toolbox folder. You should be able to access them after restarting SPM.

Questions, bug reports

If you have questions about using the tools, please have a look into the forums. If you do not find an answer to your question, please do not hesitate to post it there. If you think you have found a bug in any of the toolbox function, please have a look at the existing tickets. If you do not find your issue described there, please open a new ticket. Include in your ticket

• a short description of what you were about to do
• a text copy of the MATLAB command window output
• if applicable, the SPM batch job you tried to run

Welcome to Trac 0.11.2.1

Trac is a minimalistic approach to web-based management of software projects. Its goal is to simplify effective tracking and handling of software issues, enhancements and overall progress.

All aspects of Trac have been designed with the single goal to help developers write great software while staying out of the way and imposing as little as possible on a team's established process and culture.

As all Wiki pages, this page is editable, this means that you can modify the contents of this page simply by using your web-browser. Simply click on the "Edit this page" link at the bottom of the page. WikiFormatting will give you a detailed description of available Wiki formatting commands.

TracGuide is a good place to start.

Enjoy!
The Trac Team

Starting Points

• TracGuide -- Built-in Documentation
• The Trac project -- Trac Open Source Project
• Trac FAQ -- Frequently Asked Questions
• TracSupport -- Trac Support

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