Welcome to spmtools
The toolboxes collected in spmtools come from a variety of sources. Most of them were developed at Freiburg Brain Imaging. The tools are split in several toolboxes:
- Diffusion: a toolbox that allows to compute diffusion tensors, anisotropy and basic fiber tracking from diffusion weighted images
- TSDiffAna: a toolbox to evaluate the quality of your acquired data and to identify possibly problematic scans
- Render3D: a toolbox that allows to render e.g. SPM results on a 3D surface of the brain
- Demos: this is not really a toolbox, but a collection of demonstration scripts and functions that explain some of the basic principles used in SPM paradigm and model design
- Volumes: a multitude of tools that do not fit into the above categories and somehow manipulate
- NIfTI images
- SPM results
Download and Installation
Download from Sourceforge download site
Select the appropriate toolbox archive for the toolbox and SPM version you want to use.
Download from Subversion
The subversion web interface allows to download tar.gz archives which contain all files and folders for the toolboxes. Navigate to the toolbox you want to download. For SPM8, go to the trunk/ folder to download the latest revision. For the Diffusion and Volumes toolbox, there are separate SPM5 versions available in the branches/spm5/ folder. In this folder, you should see a toolbox/ folder. To start your download, click Download GNU tarball.
Save the downloaded file in your SPM software folder (where all you SPM code is installed). The downloaded file can be unpacked from the MATLAB command line with the command untar('downloaded_file.tar.gz',spm('dir')). Replace `'downloaded_file.tar.gz'¸ with the path and filename of the file you just downloaded. Alternatively, you can use any file manager to unpack the file. If successful, you should find additional entries in your SPM toolbox folder. You should be able to access them after restarting SPM.
Questions, bug reports
If you have questions about using the tools, please have a look into the forums. If you do not find an answer to your question, please do not hesitate to post it there. If you think you have found a bug in any of the toolbox function, please have a look at the existing tickets. If you do not find your issue described there, please open a new ticket. Include in your ticket
- a short description of what you were about to do
- a text copy of the MATLAB command window output
- if applicable, the SPM batch job you tried to run
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