Welcome to Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry

Maltcms is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.

Quickest Start

• Get the latest binary release and unzip the archive. Then change to the unzipped directory.

Unix/Linux/MacOSX:

   >unzip Maltcms-0.95-beta-r66-2009_Nov_20.zip
   >cd Maltcms-0.95-beta-r66-2009_Nov_20

Then type the following to start the default pipeline (in cfg/default_pipeline.properties)

   >scripts/maltcms.sh -- -i res/example/ -o /home/USERNAME/maltcmsOut -f "glucoseA-short.cdf,mannitolA-short.cdf"

Note: There are currently no batch scripts for starting Maltcms on Windows OS. If you know how to write batch scripts for Windows, please

contact me directly

The only issue is the automatic creation of the classpath.

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Quick Start

Files

• Latest binary release
• Latest binary release with sources and api documentation
• Current and previous releases

Docs

• User Area
• Developer Area

Publications

• ChromA ApplicationNote

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Starting Points for Trac

• TracGuide -- Built-in Documentation
• The Trac project -- Trac Open Source Project
• Trac FAQ -- Frequently Asked Questions
• TracSupport -- Trac Support

For a complete list of local wiki pages, see TitleIndex.