Main Page
From vancouvershortr
This is the main page for the Vancouver Short Read Analysis Package - it contains the following components and manuals:
For links to downloads and more, please see the project page: http://vancouvershortr.sourceforge.net/
Contents |
Published and frequently used Components
| Package | Description |
|---|---|
| FindPeaks | A chip-seq tool (version 3.2 and 4.0) |
| File Conversion Tools | Used for processing Bed Files, Map, sam or other formats. (See Supported Input formats) |
| Variation Database | An open source schema and API for collecting, processing and analysing variations across many datasets. |
| Mutation Analysis Pipeline | A high throughput mutation analysis pipeline that provide more complex analysis on mutations in the database. |
Unpublished Components
| Package | Description |
|---|---|
| FindFeatures | A tool for identifying exons which overlap areas of interest in the genome |
| Transcriptome Analysis tools | A tool for locating all SNP and protein coding SNPs from WTSS or Genomic DNA |
| Misc utilities | A collection of tools for working with Next-Gen sequencing results. |
| Resources for Graphics | A variety of tools for creating images and interactive resources. |
General Information:
- Supported Input formats
- Brief Tutorial on how to use Java on the command line
Information for Developers
- How to build the Package for releases
- How to get setup in Eclipse
- Project File Structure - information about the file structure of the software
Mailing lists
- To join the public FindPeaks mailing list, please click here.
- The developers mailing list is also now public - it is used to announce commits to the svn system. If you are interested in reading this library for a specifc commit, please click here.
