BioPAX Validation And Best Practices Workgroup
Welcome to the BioPAX Validation And Best Practices Workgroup Page!
There is no formal membership. If you are struggling to help improve the quality and usability of BioPAX data, feel free to comment on this and related wiki pages, corresponding discussion sub-pages (do not forget your signature), BioPAX discuss Google group, and skype (igrobio) or email to Igor Rodchenkov directly.
BioPAXValidator wiki page
BioPAXRules wiki page
The latest version online: http://www.biopax.org/biopax-validator/ (check it out and find more info there, such as javadoc, rules, errors, and web service description pages!)
Current configuration of the BioPAX rules in the validator : http://sourceforge.net/p/biopax/validator/ci/default/tree/biopax-validator/src/main/resources/
Currently active rules in the online validator (mode, description): http://www.biopax.org/biopax-validator/rules.html
Implemented in the validator rules: http://sourceforge.net/p/biopax/validator/ci/default/tree/biopax-validator/src/main/java/org/biopax/validator/rules/ (there is also a little of extra configuration and code that, e.g., converts paxtools exceptions to 'syntax.error' type rule or recognizes non-standard db names )