Namespace

From bio2rdf

This page publish the official updates list for converted data source offered by Bio2RDF project.

Bio2RDF's dataset are not perfect and we do not guarantee that it is complete.

Namespace	Domain	Updated	Triples	Topics	Namespaces	SPARQL	Download (Kb)
Affymetrix	Probeset	loading	45560115	1708777	20	affymetrix	7596398
Bind	Network information	09/04/30				bind	[1]
BioCarta	Pathway					biocarta	00
BioCYC	Pathway/BioPAX	44	18699622 + xref			biocyc	3640009
BioGRID	Protein interaction
BioThesaurus@PIR	Protein
CellMap	Pathway/BioPAX					cellmap	00
ChEBI@EBI	Chemistry	09/03/25	4764030	50377	25	chebi	848036
CPD@KEGG	Chemistry	09/04/14	177199	14071	10	kegg	18271
CID@NCBI	Chemistry					cid	00
CPath	Pathway/BioPAX	09/04/07	28052098		51	cpath	4203258
CrystalEye	Structure molecule
DBpedia	Encyclopedia	09/03/23	190790	0	21	dbpedia	21141
DR@KEGG	Drug	09/04/14	116822	8117	8	dr	12076
EC@KEGG	Enzyme	09/04/14	556888	4245	4	ec	77325
EC@UniProt	Enzyme	09/04/14	36109			enzyme	4852
Ensembl	Genome					ensembl	00
GeneBank@NCBI	Sequence					genebank	00
GeneID@NCBI	Gene	loading	173132553		86	geneid	18213203
GI@NCBI	Sequence					gi
GL@KEGG	Chemistry	09/04/14	94148	10965	2	kegg	9702
GO	Ontology	09/03/15	8188649	804979	144	go	840813
GOBASE	Organelle
HGNC	Genome	09/03/25	1085662	125256	14	hgnc	115347
HomoloGene@NCBI	Homolog	09/03/31	6598206		7	homologene	606293
HPRD	Protein interaction					hprd	00
HumanCyc	Protein interaction					humancyc	00
INOH	Pathway/BioPAX					inoh	00
IntAct	Protein interaction					intact	00
InterPro	Protein					interpro	00
IPI@EBI	Protein
IProClass@PIR	Protein	loading	191608264		19	iproclass	21440149
IProLINK@PIR	Protein					iprolink	00
MeSH	Litterature					mesh	00
MGI	Genome	09/03/25	3089976		12	mgi	295178
Mint	Protein interaction					mint	00
OBO	Ontology	09/03/27	4507016	4954332	165	obo	442521
OMIM@NCBI	Disease	09/03/24	1048053	32102	7	omim	182784
Path@KEGG	Pathway	09/03/28	50793314			kegg	5569736
PFam	Protein					pfam	00
PDB	Protein	09/03/21	1215254	44569	2	pdb	150515
PID	Protein					pid	00
PIRSF@PIR	Protein					pirsf	00
ProDom	Protein					prodom	00
Prosite	Protein					prosite	00
Pubmed@UniProt	Article	09/03/31				pubmed	99
Pubmed@NCBI	Article	09/03/31				pubmed	99
Reactome	Pathway/BioPAX	09/04/15	57527092		22	reactome	10840295
RN@KEGG	Pathway	09/04/15	110971	7755	5	kegg	12440
SGD	Genome	09/04/15	1437648		13	sgd	178866
SID@NCBI	Chemistry					sid	00
Taxonomy@UniProt	Taxon	09/04/14	3230933			taxonomy	357949
UniParc@UniProt	Sequence	09/04/09	558899944		53	uniparc	75610497
UniPathway@UniProt	Pathway	09/04/14	8508			unipathway	1283
UniProtKB@UniProt	Protein	09/04/16	455895342		135	uniprot	54541324
UniRef@UniProt	Homolog	09/04/08	389647404		5	uniref	53565726
UniSTS@NCBI	Marker	09/03/31	7542235		7	unists	686583